Difference between revisions of "Tools2D"
From SAXSutilities wiki
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* The integration range can be restricted. | * The integration range can be restricted. | ||
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==== Typical application: partial azimuthal integration in a reduced angular range ==== | ==== Typical application: partial azimuthal integration in a reduced angular range ==== | ||
'''NOTE: This can be also applied to files from the HDF5 REDUCTION pipeline !!''' | '''NOTE: This can be also applied to files from the HDF5 REDUCTION pipeline !!''' | ||
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* In case of (B): specify q range in pixel coordinates (use plot2D with array coordinate system for selection). | * In case of (B): specify q range in pixel coordinates (use plot2D with array coordinate system for selection). | ||
* Click 'start data reduction'. | * Click 'start data reduction'. | ||
| − | + | </ul> | |
==== HDF5 REDUCTION ==== | ==== HDF5 REDUCTION ==== | ||
<hr> | <hr> | ||
* This routine is '''based on dahu / PyFAI''' | * This routine is '''based on dahu / PyFAI''' | ||
Revision as of 15:35, 5 May 2020
Data reduction of two-dimensional images in HDF5 (Dectris and various ESRF flavours) or EDF format. Routines for data conversion are available.
Contents
Features:
- Conversion from EDF to HDF5
- Conversion from HDF5 to EDF
- NOTE: it is possible to create in this way multi-edf files. It is however currently not foreseen to create multi HDF5 files.
- Averaging, subtraction and division of each two files using saxs programs is foreseen, as well.
Specific Features:
Two different data reduction routines exist:
EDF REDUCTION
- This routine is based on spd / saxs programs.
- Normalization, azimuthal regrouping and output of ASCII files can be selected individually.
- Input format can be EDF or HDF5.
- An approximated variance calculation can be activated.
- The mask information is either taken from a header key ('default') or by a file selection in S2. In any case the mask file must be present in the working directory.
- The integration range can be restricted.
- Select normalized images in Selection S1.
- Make sure that 'regrouping', 'output ASCII' and 'restrict integration' are all checked.
- Make sure the mask file is present in the working directory. The correct mask file is most of the time determined automatically ('apply mask' checked; 'default' selected).
- Choose if you want to calculate (A) I(q) averaged in a certain angular range or (B) I(angle) averaged in a certain q range.
- In case of (A): specify angular range. Negative angles are possible [-5 , 5]deg.
- In case of (B): specify q range in pixel coordinates (use plot2D with array coordinate system for selection).
- Click 'start data reduction'.
- Select azimuthally regrouped images in Selection S1.
- Make sure that 'regrouping' is not checked, 'output ASCII' and 'restrict integration' must be checked.
- No mask file is necessary in this case.
- Choose if you want to calculate (A) I(q) averaged in a certain angular range or (B) I(angle) averaged in a certain q range.
- In case of (A): specify angular range. Negative angles are possible [-5 , 5]deg.
- In case of (B): specify q range in pixel coordinates (use plot2D with array coordinate system for selection).
- Click 'start data reduction'.
Typical application: partial azimuthal integration in a reduced angular range
NOTE: This can be also applied to files from the HDF5 REDUCTION pipeline !!
starting from normalized data ('norm')
starting from zimuthally regrouped data ('azim' or 'ang')
HDF5 REDUCTION
- This routine is based on dahu / PyFAI
